5 Session info

sessionInfo()
## R version 4.2.2 (2022-10-31 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 22621)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=English_United Kingdom.utf8  LC_CTYPE=English_United Kingdom.utf8   
## [3] LC_MONETARY=English_United Kingdom.utf8 LC_NUMERIC=C                           
## [5] LC_TIME=English_United Kingdom.utf8    
## 
## attached base packages:
## [1] grid      stats4    stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] EnhancedVolcano_1.14.0       ComplexHeatmap_2.12.1        PCAtools_2.8.0              
##  [4] ggrepel_0.9.2                DT_0.26                      tibble_3.1.8                
##  [7] dplyr_1.0.10                 IsoformSwitchAnalyzeR_1.18.0 ggplot2_3.4.0               
## [10] DEXSeq_1.42.0                RColorBrewer_1.1-3           AnnotationDbi_1.58.0        
## [13] DESeq2_1.36.0                SummarizedExperiment_1.26.1  GenomicRanges_1.48.0        
## [16] GenomeInfoDb_1.32.4          IRanges_2.30.1               S4Vectors_0.34.0            
## [19] MatrixGenerics_1.8.1         matrixStats_0.63.0           Biobase_2.56.0              
## [22] BiocGenerics_0.42.0          BiocParallel_1.30.4          edgeR_3.38.4                
## [25] limma_3.52.4                
## 
## loaded via a namespace (and not attached):
##   [1] circlize_0.4.15               AnnotationHub_3.4.0           BiocFileCache_2.4.0          
##   [4] DRIMSeq_1.24.0                plyr_1.8.8                    lazyeval_0.2.2               
##   [7] tximeta_1.14.1                splines_4.2.2                 digest_0.6.31                
##  [10] foreach_1.5.2                 ensembldb_2.20.2              htmltools_0.5.4              
##  [13] magick_2.7.3                  fansi_1.0.3                   magrittr_2.0.3               
##  [16] memoise_2.0.1                 BSgenome_1.64.0               ScaledMatrix_1.4.1           
##  [19] cluster_2.1.4                 doParallel_1.0.17             tzdb_0.3.0                   
##  [22] Biostrings_2.64.1             readr_2.1.3                   annotate_1.74.0              
##  [25] vroom_1.6.0                   prettyunits_1.1.1             jpeg_0.1-10                  
##  [28] colorspace_2.0-3              blob_1.2.3                    rappdirs_0.3.3               
##  [31] xfun_0.36                     crayon_1.5.2                  RCurl_1.98-1.9               
##  [34] jsonlite_1.8.4                tximport_1.24.0               genefilter_1.78.0            
##  [37] iterators_1.0.14              survival_3.4-0                glue_1.6.2                   
##  [40] gtable_0.3.1                  zlibbioc_1.42.0               XVector_0.36.0               
##  [43] GetoptLong_1.0.5              DelayedArray_0.22.0           BiocSingular_1.12.0          
##  [46] shape_1.4.6                   scales_1.2.1                  futile.options_1.0.1         
##  [49] DBI_1.1.3                     Rcpp_1.0.9                    xtable_1.8-4                 
##  [52] progress_1.2.2                clue_0.3-63                   dqrng_0.3.0                  
##  [55] rsvd_1.0.5                    bit_4.0.5                     htmlwidgets_1.6.1            
##  [58] httr_1.4.4                    ellipsis_0.3.2                farver_2.1.1                 
##  [61] pkgconfig_2.0.3               XML_3.99-0.13                 sass_0.4.4                   
##  [64] dbplyr_2.2.1                  locfit_1.5-9.7                utf8_1.2.2                   
##  [67] labeling_0.4.2                tidyselect_1.2.0              rlang_1.0.6                  
##  [70] reshape2_1.4.4                later_1.3.0                   munsell_0.5.0                
##  [73] BiocVersion_3.15.2            tools_4.2.2                   cachem_1.0.6                 
##  [76] cli_3.6.0                     generics_0.1.3                RSQLite_2.2.20               
##  [79] evaluate_0.20                 stringr_1.5.0                 fastmap_1.1.0                
##  [82] yaml_2.3.7                    knitr_1.42                    bit64_4.0.5                  
##  [85] purrr_1.0.1                   KEGGREST_1.36.3               AnnotationFilter_1.20.0      
##  [88] sparseMatrixStats_1.8.0       mime_0.12                     formatR_1.14                 
##  [91] xml2_1.3.3                    biomaRt_2.52.0                compiler_4.2.2               
##  [94] rstudioapi_0.14               filelock_1.0.2                curl_5.0.0                   
##  [97] png_0.1-8                     interactiveDisplayBase_1.34.0 statmod_1.5.0                
## [100] geneplotter_1.74.0            bslib_0.4.2                   stringi_1.7.12               
## [103] highr_0.10                    futile.logger_1.4.3           GenomicFeatures_1.48.4       
## [106] lattice_0.20-45               ProtGenerics_1.28.0           Matrix_1.5-3                 
## [109] vctrs_0.5.1                   pillar_1.8.1                  lifecycle_1.0.3              
## [112] BiocManager_1.30.19           jquerylib_0.1.4               GlobalOptions_0.1.2          
## [115] irlba_2.3.5.1                 cowplot_1.1.1                 bitops_1.0-7                 
## [118] httpuv_1.6.8                  rtracklayer_1.56.1            R6_2.5.1                     
## [121] BiocIO_1.6.0                  hwriter_1.3.2.1               bookdown_0.32                
## [124] promises_1.2.0.1              gridExtra_2.3                 codetools_0.2-18             
## [127] lambda.r_1.2.4                assertthat_0.2.1              rjson_0.2.21                 
## [130] withr_2.5.0                   GenomicAlignments_1.32.1      Rsamtools_2.12.0             
## [133] GenomeInfoDbData_1.2.8        parallel_4.2.2                hms_1.1.2                    
## [136] beachmat_2.12.0               VennDiagram_1.7.3             tidyr_1.2.1                  
## [139] DelayedMatrixStats_1.18.2     rmarkdown_2.19                shiny_1.7.4                  
## [142] restfulr_0.0.15